ProteoWizard
Functions | Variables
PeptideID_flatTest.cpp File Reference
#include "pwiz/utility/misc/Std.hpp"
#include <cstring>
#include "PeptideID_flat.hpp"
#include "pwiz/utility/minimxml/SAXParser.hpp"
#include "pwiz/utility/misc/unit.hpp"

Go to the source code of this file.

Functions

void testIStream ()
 
void testMSInspectIStream ()
 
int main (int argc, char *argv[])
 

Variables

ostream * os_
 
const char * sampleFlat
 
const char * sampleMSI
 

Function Documentation

◆ testIStream()

void testIStream ( )

Definition at line 48 of file PeptideID_flatTest.cpp.

49{
50 istringstream data (sampleFlat);
51
52 PeptideID_flat ppFlat(&data, shared_ptr<FlatRecordBuilder>(new FlatRecordBuilder));
53
54 PeptideID::Location loc("1", 1000., 0);
55 PeptideID::Record bf = ppFlat.record(loc);
56
57 unit_assert(bf.nativeID == "1");
58 unit_assert(bf.sequence == "ABC");
59 unit_assert_equal(bf.normalizedScore, 0.9, 1e-14);
60}
const char * sampleFlat
This class allows access to peptides listed in a flat tab delimited text file.
#define unit_assert(x)
Definition unit.hpp:85
#define unit_assert_equal(x, y, epsilon)
Definition unit.hpp:99

References pwiz::peptideid::PeptideID::Record::nativeID, pwiz::peptideid::PeptideID::Record::normalizedScore, pwiz::peptideid::PeptideID_flat::record(), sampleFlat, pwiz::peptideid::PeptideID::Record::sequence, unit_assert, and unit_assert_equal.

Referenced by main().

◆ testMSInspectIStream()

void testMSInspectIStream ( )

Definition at line 62 of file PeptideID_flatTest.cpp.

63{
64 istringstream data (sampleMSI);
65
66 PeptideID_flat ppFlat(&data, shared_ptr<FlatRecordBuilder>(new MSInspectRecordBuilder()));
67
68 PeptideID::Location loc("1", 2.248, 878.889);
69 PeptideID::Record bf = ppFlat.record(loc);
70
71 unit_assert(bf.nativeID == "1");
72 unit_assert(bf.sequence == "");
73 unit_assert_equal(bf.normalizedScore, 0.05977635, 1e-14);
74}
const char * sampleMSI

References pwiz::peptideid::PeptideID::Record::nativeID, pwiz::peptideid::PeptideID::Record::normalizedScore, pwiz::peptideid::PeptideID_flat::record(), sampleMSI, pwiz::peptideid::PeptideID::Record::sequence, unit_assert, and unit_assert_equal.

Referenced by main().

◆ main()

int main ( int  argc,
char *  argv[] 
)

Definition at line 91 of file PeptideID_flatTest.cpp.

92{
93 TEST_PROLOG(argc, argv)
94
95 try
96 {
97 if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
100 //testFilename();
101 //testDone();
102 //testBadXML();
103 //testNested();
104 }
105 catch (exception& e)
106 {
107 TEST_FAILED(e.what())
108 }
109 catch (...)
110 {
111 TEST_FAILED("Caught unknown exception.")
112 }
113
115}
void testMSInspectIStream()
void testIStream()
ostream * os_
#define TEST_EPILOG
Definition unit.hpp:183
#define TEST_FAILED(x)
Definition unit.hpp:177
#define TEST_PROLOG(argc, argv)
Definition unit.hpp:175

References os_, TEST_EPILOG, TEST_FAILED, TEST_PROLOG, testIStream(), and testMSInspectIStream().

Variable Documentation

◆ os_

ostream* os_

Definition at line 34 of file PeptideID_flatTest.cpp.

Referenced by main().

◆ sampleFlat

const char* sampleFlat
Initial value:
=
"1\t1000.0\t1000.0\t0.9\tABC\n"
"2\t2000\t500.0\t0.7\tDEF\n"

Definition at line 36 of file PeptideID_flatTest.cpp.

Referenced by testIStream().

◆ sampleMSI

const char* sampleMSI
Initial value:
=
"scan time mz mass intensity charge chargeStates kl background median peaks scanFirst scanLast scanCount\n"
"1 2.248 878.889 1755.7633 61.847733 2 1 0.05977635 0.9152653 1.0536207 5 693 721 1\n"
"1 2.248 752.86017 1503.7076 41.52021 2 1 0.10636939 1.6415321 0.8086928 5 693 715 1\n"
"1 2.248 933.4445 932.4372 33.840942 1 1 0.2521489 5.717129 2.8336976 2 695 707 1\n"
"4 7.116 801.4013 800.3538 18.389582 1 1 0.6249515 1.6089915 1.3883085 3 698 713 1\n"

Definition at line 40 of file PeptideID_flatTest.cpp.

Referenced by testMSInspectIStream().