Here is a list of all class members with links to the classes they belong to:
- p -
- pages : pwiz::identdata::BibliographicReference
- Parabola() : pwiz::math::Parabola
- Param : pwiz::identdata::DelimReader
- param : Root
- param2 : Second
- param3 : Second
- Parameter() : pwiz::data::peakdata::Software::Parameter, pwiz::data::pepxml::Parameter
- parameterCount() : ParametrizedCosine, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction, pwiz::frequency::ParametrizedFunction< value_type >, pwiz::frequency::TruncatedLorentzian
- parameters : pwiz::data::peakdata::Software, pwiz::data::pepxml::SearchSummary
- Parameters : pwiz::frequency::ParameterEstimator
- parameters() : pwiz::frequency::TruncatedLorentzianParameters
- ParametrizedDerivativeSlice() : pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice< value_type >
- ParametrizedFunctionSlice() : pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice< value_type >
- ParamGroup() : pwiz::data::ParamGroup
- paramGroupPtrs : pwiz::data::ParamContainer, pwiz::msdata::MSData
- params : pwiz::analysis::MS2Deisotoper, pwiz::analysis::MS2NoiseFilter
- Params() : pwiz::analysis::MSXDemultiplexer::Params, pwiz::analysis::OverlapDemultiplexer::Params
- params : pwiz::analysis::PrecursorMassFilter
- Params() : pwiz::analysis::SpectrumList_Demux::Params
- params_ : pwiz::analysis::MSXDemultiplexer, pwiz::analysis::OverlapDemultiplexer
- parent : pwiz::identdata::Organization
- parent_file : pwiz::data::pepxml::DataFilter
- parentIndex : isotopeChain
- parentsAfter : TestChargeStateCalculator
- parentsAfter_ : pwiz::analysis::SpectrumList_ChargeFromIsotope
- parentsBefore : TestChargeStateCalculator
- parentsBefore_ : pwiz::analysis::SpectrumList_ChargeFromIsotope
- parentsIsA : pwiz::cv::CVTermInfo, pwiz::data::Term
- parentsPartOf : pwiz::cv::CVTermInfo, pwiz::data::Term
- parentTolerance : pwiz::identdata::SpectrumIdentificationProtocol
- parse() : pwiz::util::IntegerSet
- parseAttributes() : pwiz::minimxml::SAXParser::Handler::Attributes
- parseCharacters : pwiz::minimxml::SAXParser::Handler
- partialDiffOK : pwiz::data::BaseDiffConfig
- passThreshold : pwiz::identdata::ProteinDetectionHypothesis, pwiz::identdata::SpectrumIdentificationItem
- pastMaxIndex : SelectedIndexPredicate
- path : pwiz::identdata::CVMap
- pathmask : TestPathmask
- pathnameArray : TestPathmask
- pattern : pwiz::identdata::RegexCVMap
- Peak : pwiz::analysis::PeakelGrower, pwiz::analysis::PeakExtractor, pwiz::analysis::PeakFitter
- peak : pwiz::analysis::RegionAnalyzer::SpectrumStats, pwiz::data::peakdata::HandlerPeak
- Peak() : pwiz::data::peakdata::Peak, pwiz::frequency::FrequencyEstimator
- peakarea_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peakCount : pwiz::frequency::PeakDetectorMatchedFilter::Score
- peakel : pwiz::data::peakdata::HandlerPeakel
- Peakel() : pwiz::data::peakdata::Peakel
- peakelGrower_ : pwiz::analysis::FeatureDetectorPeakel
- peakelGrower_Proximity : pwiz::analysis::FeatureDetectorPeakel::Config
- PeakelGrower_Proximity() : pwiz::analysis::PeakelGrower_Proximity
- peakelPicker_ : pwiz::analysis::FeatureDetectorPeakel
- peakelPicker_Basic : pwiz::analysis::FeatureDetectorPeakel::Config
- PeakelPicker_Basic() : pwiz::analysis::PeakelPicker_Basic
- peakels : pwiz::data::peakdata::Feature
- PeakExtractor() : pwiz::analysis::PeakExtractor
- peakExtractor_ : pwiz::analysis::FeatureDetectorPeakel
- peakFamilies : pwiz::data::peakdata::Scan
- PeakFamily : pwiz::analysis::PeakFamilyDetector, pwiz::data::peakdata::PeakFamily
- peakFamilyDetector : pwiz::analysis::PrecursorRecalculatorDefault::Config
- PeakFamilyDetectorFT() : pwiz::analysis::PeakFamilyDetectorFT
- peakFinder_ : pwiz::analysis::PeakExtractor
- peakFinder_SNR : pwiz::analysis::FeatureDetectorPeakel::Config
- PeakFinder_SNR() : pwiz::analysis::PeakFinder_SNR
- peakFitter_ : pwiz::analysis::PeakExtractor
- peakFitter_Parabola : pwiz::analysis::FeatureDetectorPeakel::Config
- PeakFitter_Parabola() : pwiz::analysis::PeakFitter_Parabola
- PeakIntegrator : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peakmass_ : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peakMaxCorrelationAngle : pwiz::frequency::PeakDetectorMatchedFilter::Config
- PeakPicker() : ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peakPicking : pwiz::util::ReaderTestConfig
- peaks : pwiz::data::peakdata::Peakel, pwiz::data::peakdata::PeakFamily, pwiz::frequency::PeakDetectorMatchedFilter::Score, pwiz::util::MSIHandler::Record
- peaksCount : pwiz::msdata::SpectrumIdentityFromMzXML
- peakThresholdFactor : pwiz::frequency::PeakDetectorMatchedFilter::Config
- Pep2MzIdent() : pwiz::identdata::Pep2MzIdent
- peptide : pwiz::analysis::PepxmlRecordReader::record
- Peptide : pwiz::chemistry::IsotopeEnvelopeEstimator::Config
- peptide : pwiz::data::pepxml::SearchHit
- Peptide() : pwiz::identdata::Peptide, pwiz::identdata::Serializer_Text, pwiz::proteome::Peptide, pwiz::tradata::Peptide
- Peptide::Impl : pwiz::proteome::ModificationMap
- PeptideEvidence() : pwiz::identdata::PeptideEvidence
- peptideEvidence : pwiz::identdata::SequenceCollection
- peptideEvidencePtr : pwiz::identdata::PeptideHypothesis, pwiz::identdata::SpectrumIdentificationItem
- peptideHypothesis : pwiz::identdata::ProteinDetectionHypothesis
- PeptideID_flat() : pwiz::peptideid::PeptideID_flat
- PeptideID_pepXml() : pwiz::peptideid::PeptideID_pepXml
- peptideNextAA : pwiz::data::pepxml::SearchHit
- peptidePrevAA : pwiz::data::pepxml::SearchHit
- peptideprophet_summary : pwiz::data::pepxml::AnalysisSummary
- peptideProphetResult : pwiz::data::pepxml::AnalysisResult
- PeptideProphetResult() : pwiz::data::pepxml::PeptideProphetResult
- peptidePtr : pwiz::identdata::PeptideEvidence, pwiz::identdata::SpectrumIdentificationItem, pwiz::tradata::Target, pwiz::tradata::Transition
- peptidePtrs : pwiz::tradata::TraData
- peptides : pwiz::identdata::SequenceCollection
- peptideSequence : pwiz::identdata::Peptide
- peptideTerminus : pwiz::data::pepxml::AminoAcidModification
- pepxmlfile : pwiz::analysis::PepxmlRecordReader::Config
- PepxmlRecordReader() : pwiz::analysis::PepxmlRecordReader
- Person() : pwiz::identdata::Person
- pick() : pwiz::analysis::PeakelPicker, pwiz::analysis::PeakelPicker_Basic
- pimpl : pwiz::identdata::DelimReader, pwiz::identdata::MascotReader, pwiz::identdata::Pep2MzIdent, pwiz::peptideid::PeptideID::Iterator, pwiz::peptideid::PeptideID_flat, pwiz::peptideid::PeptideID_pepXml, pwiz::util::DefaultTabHandler, pwiz::util::MSIHandler, pwiz::util::TabReader
- pinned_gcroot() : msclr::pinned_gcroot< T >
- pixel() : pwiz::util::Image
- pmc_ : pwiz::analysis::MSXDemultiplexer, pwiz::analysis::OverlapDemultiplexer
- Point() : pwiz::util::Image::Point
- pointer : pwiz::msdata::SpectrumIterator, pwiz::proteome::Digestion::const_iterator, pwiz::util::CharIndexedVectorConstIterator< T >, pwiz::util::CharIndexedVectorIterator< T >, pwiz::util::IntegerSet::Iterator, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- poisson : pwiz::analysis::MS2Deisotoper::Config
- polarity : pwiz::analysis::SpectrumList_FilterPredicate_Polarity
- polarityStringForFilter() : pwiz::msdata::ChromatogramListBase
- polynomialOrder : TestData
- pop_back() : pwiz::util::BinaryData< T >
- popStyle() : pwiz::minimxml::XMLWriter
- position : pwiz::data::pepxml::ModAminoAcidMass, pwiz::minimxml::XMLWriter
- positionNext() : pwiz::minimxml::XMLWriter
- possible_charges : TestSpectrumInfo
- post : pwiz::identdata::PeptideEvidence
- PPM : pwiz::chemistry::MZTolerance
- ppm_ : ralab::base::resample::PPMCompFunctor< TReal >
- PPMCompFunctor() : ralab::base::resample::PPMCompFunctor< TReal >
- pre : pwiz::identdata::PeptideEvidence
- precision : pwiz::analysis::SpectrumBinaryData::Config, pwiz::data::BaseDiffConfig, pwiz::msdata::BinaryDataEncoder::Config
- Precision : pwiz::msdata::BinaryDataEncoder
- Precision_32 : pwiz::msdata::BinaryDataEncoder
- Precision_64 : pwiz::msdata::BinaryDataEncoder
- precisionOverrides : pwiz::msdata::BinaryDataEncoder::Config
- precursor : pwiz::msdata::Chromatogram
- Precursor() : pwiz::msdata::Precursor
- precursor : pwiz::tradata::Target, pwiz::tradata::Transition
- precursor_ion_charge : pwiz::data::pepxml::MixtureModel
- precursor_mz : TestSpectrumInfo
- precursorCharge : TestMS2Denoise
- PrecursorInfo() : pwiz::analysis::PrecursorRecalculator::PrecursorInfo, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo, pwiz::msdata::SpectrumInfo::PrecursorInfo
- precursorList : pwiz::analysis::SpectrumList_ScanSummer
- precursorMap : pwiz::analysis::SpectrumList_ScanSummer
- PrecursorMaskCodec() : pwiz::analysis::PrecursorMaskCodec
- precursorMass : TestMS2Denoise
- PrecursorMassFilter() : pwiz::analysis::PrecursorMassFilter
- precursorMassType : pwiz::data::pepxml::SearchSummary
- precursorMZs : precursorGroup
- precursorMzSet_ : pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet
- precursorNeutralMass : pwiz::data::pepxml::SpectrumQuery
- PrecursorRecalculatorDefault() : pwiz::analysis::PrecursorRecalculatorDefault
- precursors : pwiz::msdata::Spectrum, pwiz::msdata::SpectrumInfo
- precursorsPerSpectrum_ : pwiz::analysis::PrecursorMaskCodec
- precursorTol_ : pwiz::analysis::SpectrumList_ScanSummer
- PredicatePtr : pwiz::analysis::ProteinList_DecoyGenerator
- prediction : pwiz::tradata::Transition
- preferOnlyMsLevel : pwiz::msdata::Reader::Config
- prefix() : pwiz::cv::CVTermInfo, pwiz::data::Term
- prefixes : pwiz::data::OBO
- preprocess() : ParametrizedCosine
- preprocessWithLogarithm : pwiz::analysis::PeakFinder_SNR::Config
- print_headers() : pwiz::analysis::PepxmlRecordReader
- PrintAttribute() : PrintAttribute
- printDifferenceQuotientSequence() : pwiz::frequency::DerivativeTest::VectorFunction< value_type >
- PrintEventHandler() : PrintEventHandler
- prior_probability : pwiz::data::pepxml::MixtureModel
- probability : pwiz::data::pepxml::PeptideProphetResult
- problem_ : ralab::base::ms::SimplePicker< TReal >
- process() : pwiz::util::TabReader
- processBatch() : pwiz::msdata::SpectrumWorkerThreads
- processingInstruction() : PrintEventHandler, pwiz::minimxml::SAXParser::Handler, pwiz::minimxml::XMLWriter
- ProcessingMethod() : pwiz::msdata::ProcessingMethod
- processingMethod_ : pwiz::analysis::PrecursorMaskCodec
- processingMethods : pwiz::msdata::DataProcessing
- product : pwiz::msdata::Chromatogram, pwiz::tradata::Transition
- products : pwiz::msdata::Spectrum
- progress() : CancelProgressCallback, pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback, SimpleProgressCallback
- prompt() : pwiz::util::ClickwrapPrompter
- propertyValues : pwiz::cv::CVTermInfo, pwiz::data::Term
- protein() : FilterWrapper, pwiz::analysis::PepxmlRecordReader::record, pwiz::analysis::ProteinList_DecoyGenerator, pwiz::analysis::ProteinList_Filter, pwiz::data::pepxml::AlternativeProtein, pwiz::data::pepxml::SearchHit
- Protein : pwiz::identdata::Serializer_Text, pwiz::proteome::Protein
- protein() : pwiz::proteome::ProteinList, pwiz::proteome::ProteinListCache, pwiz::proteome::ProteinListSimple, pwiz::proteome::ProteinListWrapper
- Protein() : pwiz::tradata::Protein
- protein_descr : pwiz::peptideid::PeptideID::Record
- ProteinAmbiguityGroup() : pwiz::identdata::ProteinAmbiguityGroup
- proteinAmbiguityGroup : pwiz::identdata::ProteinDetectionList
- proteinDescr : pwiz::data::pepxml::AlternativeProtein, pwiz::data::pepxml::SearchHit
- ProteinDescription : pwiz::identdata::Serializer_Text
- proteinDetection : pwiz::identdata::AnalysisCollection
- ProteinDetection() : pwiz::identdata::ProteinDetection
- proteinDetectionHypothesis : pwiz::identdata::ProteinAmbiguityGroup
- ProteinDetectionHypothesis() : pwiz::identdata::ProteinDetectionHypothesis
- ProteinDetectionList() : pwiz::identdata::ProteinDetectionList
- proteinDetectionListPtr : pwiz::identdata::AnalysisData, pwiz::identdata::ProteinDetection
- proteinDetectionProtocol : pwiz::identdata::AnalysisProtocolCollection
- ProteinDetectionProtocol() : pwiz::identdata::ProteinDetectionProtocol
- proteinDetectionProtocolPtr : pwiz::identdata::ProteinDetection
- ProteinList_DecoyGenerator() : pwiz::analysis::ProteinList_DecoyGenerator
- ProteinList_DecoyGeneratorPredicate_Reversed() : pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Reversed
- ProteinList_DecoyGeneratorPredicate_Shuffled() : pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled
- ProteinList_Filter() : pwiz::analysis::ProteinList_Filter
- ProteinList_FilterPredicate_IdSet() : pwiz::analysis::ProteinList_FilterPredicate_IdSet
- ProteinList_FilterPredicate_IndexSet() : pwiz::analysis::ProteinList_FilterPredicate_IndexSet
- ProteinListCache() : pwiz::proteome::ProteinListCache
- proteinListPtr : pwiz::proteome::ProteomeData
- ProteinListWrapper() : pwiz::proteome::ProteinListWrapper
- proteinPtrs : pwiz::tradata::Peptide, pwiz::tradata::TraData
- proteins : pwiz::proteome::ProteinListSimple
- ProteomeData() : pwiz::proteome::ProteomeData
- ProteomeDataFile() : pwiz::proteome::ProteomeDataFile
- provider : pwiz::identdata::IdentData
- Provider() : pwiz::identdata::Provider
- ptr : pwiz::analysis::DemuxSolver, pwiz::analysis::IDemultiplexer, pwiz::analysis::IPrecursorMaskCodec
- publication : pwiz::identdata::BibliographicReference
- publications : pwiz::tradata::TraData
- publisher : pwiz::identdata::BibliographicReference
- push_back() : pwiz::util::BinaryData< T >
- pushSpectrum() : pwiz::analysis::SpectrumList_ScanSummer
- pushStyle() : pwiz::minimxml::XMLWriter
- pvalue() : pwiz::analysis::Noise